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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs67088894 chr16:20746239 G/C 3.38E-5 490 16.38 14.47 17.65 KM Plot
THCA rs6712963 chr2:201982693 G/A 0.000236 482 16.2 15.77 5.8 KM Plot
THCA rs6713233 chr2:201819627 G/A 0.000103 486 16.13 16.37 4.72 KM Plot
THCA rs671790 chr4:1076885 C/G 2.64E-5 485 16.07 15.57 9.85 KM Plot
THCA rs6718037 chr2:48349191 T/G 8.68E-6 481 14.85 17.35 14.47 KM Plot
THCA rs67189845 chr3:155666580 CACTTTAGTGATCACTTAAAGTGATCAACTCCTT/C 0.000212 486 9 14.65 16.37 KM Plot
THCA rs6721078 chr2:29119462 G/A 0.00011 490 14.3 15.22 16.07 KM Plot
THCA rs6721411 chr2:238845312 C/T 0 490 16.2 15.07 7.77 KM Plot
THCA rs67232024 chr11:93652507 G/A 0.000231 487 15.13 18.33 16.63 KM Plot
THCA rs6725033 chr2:29055386 C/G 9.57E-5 490 15.9 17.03 14.98 KM Plot
THCA rs67315844 chr2:238091608 A/G 0.000176 490 15.28 16.57 39.2 KM Plot
THCA rs6732149 chr2:48398366 T/G 1.25E-5 480 14.85 17.67 14.47 KM Plot
THCA rs6737065 chr2:29058364 G/A 9.57E-5 490 14.98 17.03 15.9 KM Plot
THCA rs6738231 chr2:29086183 C/G 9.55E-5 489 14.98 16.85 15.9 KM Plot
THCA rs6738736 chr2:29086607 C/T 9.55E-5 489 14.98 16.85 15.9 KM Plot